YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254656, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNRRFQTIK HSFTKNKFVA MGVIILAVLT VASIFAFVSP YDPSKMSIPD RLQEPSVSHP  60
   61 FGTDDYGRDY LTRALYGGRV SLAVGFLAMV VSVTIGTAVG TISGYFGGKL DNFLMRVVEV 120
  121 LMSIPSFFLM LLLNAYLKPG ITTLVLIIGL LTWMDTARIV RAETLSVKER EYVLYAKVSG 180
  181 QKSLTIIVRH IIPNILSTII IAATLTIATS ILMESSLSFL GLGIREPDSS WGSMLNNAQG 240
  241 YIGEAWYLTL FPGFLILLTV LSFNVIGEAL KKAFAPKGAG NEN

Type	Start	End	Confidence
Cytoplasmic	1	17	0.95
Transmembrane Helix	18	38	0.95
Non-Cytoplasmic	39	81	0.94
Transmembrane Helix	82	106	0.87
Cytoplasmic	107	112	0.89
Transmembrane Helix	113	133	0.91
Non-Cytoplasmic	134	139	0.70
Transmembrane Helix	140	160	0.88
Cytoplasmic	161	190	0.95
Transmembrane Helix	191	213	0.88
Non-Cytoplasmic	214	244	0.90
Transmembrane Helix	245	267	0.90
Cytoplasmic	268	283	0.97