YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261018, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.85
Transmembrane Helix	9	30	0.86
Non-Cytoplasmic	31	44	0.85
Transmembrane Helix	45	65	0.91
Cytoplasmic	66	82	0.84
Transmembrane Helix	83	105	0.88
Non-Cytoplasmic	106	119	0.79
Transmembrane Helix	120	142	0.88
Cytoplasmic	143	158	0.88
Transmembrane Helix	159	176	0.94
Non-Cytoplasmic	177	182	0.86
Transmembrane Helix	183	204	0.93
Cytoplasmic	205	229	0.96
Transmembrane Helix	230	250	0.87
Non-Cytoplasmic	251	277	0.87
Transmembrane Helix	278	302	0.89
Cytoplasmic	303	319	0.96
Transmembrane Helix	320	342	0.89
Non-Cytoplasmic	343	351	0.79
Transmembrane Helix	352	373	0.94
Cytoplasmic	374	381	0.87
Transmembrane Helix	382	401	0.95
Non-Cytoplasmic	402	407	0.76
Transmembrane Helix	408	428	0.94
Cytoplasmic	429	437	0.92
Transmembrane Helix	438	460	0.89
Non-Cytoplasmic	461	469	0.83
Transmembrane Helix	470	491	0.92
Cytoplasmic	492	506	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNKFVKGAA ILTITTFLSK VLGSFFQIPL QNIAGDEVLG IFRLVFPVYM IALTLSVAGV  60
   61 PLAISKLIAE LHEKNDQDGI AKLFTSASII GVIFGVLGFS VIMIGSSMFA NMLGGQDTRL 120
  121 PLIVTSFALL IAPYMAVYRG YFQGFGDMIP TGVSQVIEQF IRVFFMLAIA FLFVYWNKES 180
  181 DVVAGGAMIG SCLGVITSLI YLRLKYVKSI YRYKSNTYSL QDFKDNAKKI LQVSIPIAIG 240
  241 ALSMPVLNLV DSVTIPHMLH ESTTTIQEQF GIYSRGFAFT QLIVVFASAM VFPLIPLLTA 300
  301 ALTKKDIALA KQTIERTNDL AHVLTTPITI WLMALTIPLN VGLFTDAKGS GMLAILIGSS 360
  361 YFTSLMVLSI GILQGINRSK QAAWIVVGAS FVKVILNIVL VSQFGITGAA YSTLIIYIMI 420
  421 CIVNYIYIRK ELAYSIHMGR FFAVIGVSSI VGIGLYFTST FINVVDSRII TIIYSGLAFC 480
  481 VALFIYGICA LKLNWISKKQ IPFLRK