YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254441, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKMYLSSAL ISDRLSTWID IMQTSFMPML KEAVFTTIPL TLITFIIGLI LATLTALARI  60
   61 SGSRILQWIA RIYVSIIRGT PLLVQLFIIF YGLPTLNVEV EPYTAAVIGF SLNVGAYASE 120
  121 IIRASILSIP KGQWEAAYTI GMTYPQALKR VILPQATRVS IPPLSNTFIS LVKDTSLASL 180
  181 ILVTEMFRKA QEIAAMNYEF LIVYFEAGLI YWVICFLLSI VQQMLEKRSE RYTLK

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.71
Transmembrane Helix	35	58	0.88
Cytoplasmic	59	73	0.76
Transmembrane Helix	74	93	0.91
Non-Cytoplasmic	94	102	0.78
Transmembrane Helix	103	122	0.69
Cytoplasmic	123	168	0.63
Transmembrane Helix	169	183	0.28
Non-Cytoplasmic	184	199	0.55
Transmembrane Helix	200	221	0.87
Cytoplasmic	222	235	0.56