YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260943, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.93
Transmembrane Helix	10	33	0.87
Non-Cytoplasmic	34	47	0.80
Transmembrane Helix	48	70	0.88
Cytoplasmic	71	80	0.78
Transmembrane Helix	81	99	0.96
Non-Cytoplasmic	100	118	0.88
Transmembrane Helix	119	138	0.95
Cytoplasmic	139	149	0.79
Transmembrane Helix	150	168	0.96
Non-Cytoplasmic	169	192	0.87
Transmembrane Helix	193	212	0.93
Cytoplasmic	213	225	0.84
Transmembrane Helix	226	248	0.91
Non-Cytoplasmic	249	278	0.92
Transmembrane Helix	279	304	0.88
Cytoplasmic	305	315	0.83
Transmembrane Helix	316	336	0.91
Non-Cytoplasmic	337	341	0.65
Transmembrane Helix	342	359	0.95
Cytoplasmic	360	368	0.80
Transmembrane Helix	369	387	0.95
Non-Cytoplasmic	388	407	0.79
Transmembrane Helix	408	426	0.96
Cytoplasmic	427	438	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTTLKPAQI LSISLLLFAV FFGAGNMIFP PLLGLSSGEN MWISITGFII TDVGLSLLAI  60
   61 VAVALAGGSF NTLASRVHPK FAAIFAIIIY LSIGPLFVIP RTGSVSYEIG IAPLFPDQWY 120
  121 SMLIFSAIFF TVVYFLSLNP SKLVDHIGKI LTPILLGIIA IMATKAILSP GTFAEPVGDY 180
  181 KEIPFFKGFL EGFLTLDAIG ALVLSTIVVN AIRQNGIPEK KSIAKYTIIC GSIAALFLTI 240
  241 VYFLLGYIGA SNGNLGQFEN GGQLLATVMY HFFGTSGNVL LSIAIIFACL TTAIGVVSAF 300
  301 ANYFATVLTN VSYKKLVLYV CIFSFIISNL GLSLLIKITL PVLIILYPIT IILIFVSFID 360
  361 KYTKRKPSVY IGAMIAAFLI SCIHALDNVG MIPNFIANIV HTIPFYNLGI GWIIPAIIGG 420
  421 IIGYFIPQTE AEGEVSTK