YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260929, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.78
Transmembrane Helix	8	27	0.92
Cytoplasmic	28	44	0.79
Transmembrane Helix	45	66	0.82
Non-Cytoplasmic	67	81	0.50
Transmembrane Helix	82	105	0.72
Cytoplasmic	106	108	0.50
Transmembrane Helix	109	127	0.82
Non-Cytoplasmic	128	134	0.77
Transmembrane Helix	135	156	0.90
Cytoplasmic	157	176	0.87
Transmembrane Helix	177	199	0.89
Non-Cytoplasmic	200	216	0.82
Transmembrane Helix	217	238	0.86
Cytoplasmic	239	244	0.80
Transmembrane Helix	245	266	0.90
Non-Cytoplasmic	267	287	0.84
Transmembrane Helix	288	310	0.73
Cytoplasmic	311	551	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYNVQDMIF QFIGGLGIFL FGIKYMGDGL QQAAGDRLRD ILDRFTTNPL MGVLAGMLVT  60
   61 VLIQSSSGTT ALTVGLVSAG FMTLRQAIGV IMGANIGTTV TAFIIGIKIG EYALPIMAVG 120
  121 AILLFFFKNK KVHSLGQVIF GFGMLFFGLE LMSTGMKPLR SLESFQELTV SMSDNPILGI 180
  181 VVGTVFTLIV QSSSATIGIL QELFGQGAID LQAALPVLFG DNIGTTITAV LAAIGTSIAA 240
  241 RRAALVHVIF NIVGTIIFTI LLIPFTNLIQ YFQTSLNLNP EMTIAFAHGT FNVTNTIIQF 300
  301 PFIAVLAWIV TKIIRGEDAA IDFKPQHLNP IFIEQSPAIA LTEAQKEIIR MAEFSLHGLK 360
  361 EANQFLNTQD KKHVDMATQL EGAINNLDKK ITEYLVLLSE KPLSPTDSEK HSVLAGVVGD 420
  421 IERVGDHVEN LVELVDFQIS NRVSLSNEAL AELNEMLELT ISTLQDAINA LTNFDTELAQ 480
  481 TVIAKERKID QMERVLRKRH VLRLNERSCS GDASIIYVDM VSNLERIGDH AVNIADGVLG 540
  541 EQGKINLKQS L