YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260928, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHTSFRAIV VNETESKQFV RNVVAREVSS LPEGDVFIQV HYSSLNYKDA LSATGNKGVT  60
   61 RIYPHTPGID AAGVVVSSKD ATIKAGDQVI VTGYDLGMNT SGGFGEYIRV PASWIVPLPE 120
  121 EMSLKESMMY GTAGFTAALS VYKLIGAGIT PSMGDVLVTG ATGGVGSVAV SILSKLGFNV 180
  181 VGATGKMEEE EMLLRLGAKK VIHRAELNDE SGRPMLQGIY AGVIDTVGGH MLETALKTVK 240
  241 YGGCVTTCGN VAGQELQTTV YPFILRGISL LGIDSVQCPV DVRRDVWTLL ANEWGNKELR 300
  301 SYTEECILEE LDEKFTLILQ GRLKGRTVIN MK

Type	Start	End	Confidence
Cytoplasmic	1	127	0.71
Transmembrane Helix	128	147	0.66
Non-Cytoplasmic	148	156	0.77
Transmembrane Helix	157	178	0.64
Cytoplasmic	179	332	0.69