YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49177669, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	108	0.99
Transmembrane Helix	109	133	0.86
Non-Cytoplasmic	134	144	0.87
Transmembrane Helix	145	166	0.91
Cytoplasmic	167	171	0.86
Transmembrane Helix	172	192	0.89
Non-Cytoplasmic	193	213	0.90
Transmembrane Helix	214	233	0.94
Cytoplasmic	234	247	0.90
Transmembrane Helix	248	270	0.90
Non-Cytoplasmic	271	287	0.85
Transmembrane Helix	288	310	0.87
Cytoplasmic	311	327	0.85
Transmembrane Helix	328	350	0.69
Non-Cytoplasmic	351	360	0.70
Transmembrane Helix	361	381	0.81
Cytoplasmic	382	388	0.70
Transmembrane Helix	389	410	0.87
Non-Cytoplasmic	411	431	0.74
Transmembrane Helix	432	454	0.92
Cytoplasmic	455	458	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMKQIATQV LQNIGGKENI MRATHCATRL RLVLKDETKI NASEIENIDE VKGAFATTEQ  60
   61 YQIIFGTGIV NKVYDEFSKL IGIAELDSTR SNDIPKKKMN PIARLAKTLS NIFVPIIPAI 120
  121 VASGLLMGLL GMLKAFKLVP GDHSLIQLLD MFSSAAFIIL PILIGVSAAK EFGGNIFLGA 180
  181 VVGGILTHPS LTNPWTLSNA KPTVLHFLGM DIDMIGYQGT VLPILLCVYV MSTIEKELRK 240
  241 RVPNSLDLLV TPFLTIIITG FLSLIIIGPI GYKIGDGITY LLNTIYQFAG PVAGLIFGGL 300
  301 YSTIVLTGLH HSFHAIEAGL LANKDIGVNF LLPIWSMANV AQGGATLAVY FKTKNKKTKE 360
  361 IAIPAAASAF LGITEPAIFG VNLKLGKPFI AAAIGGAIGG AYVVWMQVAA NAYGLTGIPM 420
  421 LTIVAPLGMM NMIHYIIGFA IAVTTAFVAT FILYKESK