YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260887, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.52
Transmembrane Helix	5	24	0.55
Cytoplasmic	25	60	0.89
Transmembrane Helix	61	80	0.93
Non-Cytoplasmic	81	128	0.89
Transmembrane Helix	129	151	0.91
Cytoplasmic	152	169	0.87
Transmembrane Helix	170	190	0.93
Non-Cytoplasmic	191	248	0.95
Transmembrane Helix	249	267	0.96
Cytoplasmic	268	277	0.80
Transmembrane Helix	278	297	0.95
Non-Cytoplasmic	298	371	0.93
Transmembrane Helix	372	394	0.91
Cytoplasmic	395	411	0.93
Transmembrane Helix	412	436	0.86
Non-Cytoplasmic	437	478	0.94
Transmembrane Helix	479	501	0.86
Cytoplasmic	502	520	0.90
Transmembrane Helix	521	544	0.90
Non-Cytoplasmic	545	555	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIWVAVVITM LLFILVAKPT GIYLEKAFQG SKKLDKVFGP FEKLIFKITG VKEYNQTWKQ  60
   61 YALSLVLLNG FMIVVVYFIF RLQGVLPLNP AHIEGMEPTL AFNTAISFMA DTNLQHYSGE 120
  121 NGLSYLSQLI GITFLMFAAP ATTLALVMAF IRGLAGKELG NFFIDFTRAL TRVFLPIAFM 180
  181 AALVFVALGV PQTLDGAVTA QTIDGAKQSI LRGPVASFVA IKELGNNGGG FFGANSTHPF 240
  241 ENPGQMSNIL QMMLMMLLPT ALPFTYGRMV GNKKQGRILF VSLFMVFLLG FITITTSELN 300
  301 GNPALNAMGI EHVQGSTEGK EVRFGTVFSS LYATVTTAAE TGAVNTMHDT LTPIGGLVPL 360
  361 VNMMLNTVYG GVGAGFVNII MYAIIAVFIS GLMVGRTPEF LGKKIEGKEM KLIAVTILFH 420
  421 PLLILGFSAL ALSTSLGTDA ISHSGFHGLT QVVYEYTSSA ANNGSGFEGL GDNTPFWNIT 480
  481 TGLVMFLGRY FSLITMLAVA ASLKEKTVVP ETVGTFRTDN GLFGGIFIGT IVIVGALTFF 540
  541 PMLVLGPIAE FLTLK