YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260857, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.86
Transmembrane Helix	5	24	0.89
Cytoplasmic	25	33	0.94
Transmembrane Helix	34	57	0.82
Non-Cytoplasmic	58	73	0.76
Transmembrane Helix	74	94	0.90
Cytoplasmic	95	116	0.90
Transmembrane Helix	117	136	0.96
Non-Cytoplasmic	137	155	0.87
Transmembrane Helix	156	175	0.93
Cytoplasmic	176	186	0.66
Transmembrane Helix	187	205	0.92
Non-Cytoplasmic	206	230	0.96
Transmembrane Helix	231	251	0.94
Cytoplasmic	252	270	0.90
Transmembrane Helix	271	291	0.94
Non-Cytoplasmic	292	317	0.88
Transmembrane Helix	318	344	0.88
Cytoplasmic	345	363	0.89
Transmembrane Helix	364	381	0.97
Non-Cytoplasmic	382	388	0.73
Transmembrane Helix	389	410	0.92
Cytoplasmic	411	419	0.85
Transmembrane Helix	420	442	0.88
Non-Cytoplasmic	443	456	0.78
Transmembrane Helix	457	476	0.93
Cytoplasmic	477	490	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTALLIIILF LFLALFLGIR AQHGKDMNLE QWSVGGRGFG TIFVFLLMAG EIYTTFTFLG  60
   61 GSGWAYSKGA PTFYILGYGA LAYILSYFLL PPVWKYAKEH NLVSQPDFFV KKYKSQALGL 120
  121 IVSIIGVISI IPYLVLQLKG LGIIVSEASY GRVSPVIAVW IGAIVITIYV MVSGIHGSAW 180
  181 TAALKDIMIL FIVMFLGIYL PYHYYGGFQP MFEAVEAAKP GFLSLPDEGM SISWFVSTII 240
  241 LTALGFYMWP HTFASAFSAK NEKVFRKNAA IMPLYSLVLL FVFFAGFAAI LQVPGLKGGD 300
  301 VDLSLFRLAL QTFDPWFIGI IGSAGVLTAL VPGSMLVMAA STLLAKNIYR TMVPSASDRQ 360
  361 VAKVAKLFVP VVTLVAVLFT FKGGETIGAL LLMGYSIVTQ LFPALVCSLF PRQTITKQGA 420
  421 IAGMGIGLLV VAYITLSGST IATMFPGFPQ YIKDLNVGIV ALLMNMIVMF IVSGFTKNVS 480
  481 IKKDNIIVEK