YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49183660, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKGNVLQQ LGSLIGLALI IVVITALNPA FIEIPNLFNI LRQVSINALI AFGMTFVILT  60
   61 GGIDLSVGSI LALSSALVAG MMASGMDPFL AMAVGLLAGL VMGIVNGIII AKGKVAPFIA 120
  121 TLATMTIFRG LTLVYMDGRP ITGLGDHLMF QMFGRGYFLG IPVPAVTMMI AFAVLYFILK 180
  181 KTTFGRRTFA IGGNEEAAAL SGINVTKIKV MIYGLSGILA AFAGIVLTSR LDSAQPTAGT 240
  241 SYELDAIAAV VLGGTSLSGG RGWIVGTFIG VLIIGVLNNG LNLLGVSSFF QQVVKGLVIL 300
  301 LAVLIDRRKE A

Type	Start	End	Confidence
Cytoplasmic	1	10	0.48
Transmembrane Helix	11	32	0.90
Non-Cytoplasmic	33	39	0.47
Transmembrane Helix	40	63	0.74
Cytoplasmic	64	64	0.35
Transmembrane Helix	65	83	0.66
Non-Cytoplasmic	84	88	0.70
Transmembrane Helix	89	110	0.92
Cytoplasmic	111	117	0.70
Transmembrane Helix	118	136	0.91
Non-Cytoplasmic	137	156	0.86
Transmembrane Helix	157	179	0.94
Cytoplasmic	180	209	0.89
Transmembrane Helix	210	229	0.89
Non-Cytoplasmic	230	261	0.59
Transmembrane Helix	262	286	0.76
Cytoplasmic	287	311	0.55