YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260811, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKFILRRIL VMIPQLFVLS VLVFTLAKAM PGDALSGAEL ANPKADPKVI EEQREKLGLN  60
   61 DPIPTQYVRW ISNAVQGDFG ISYAHKIQVT DIIGERLGNT VLLALLILIL TYLIAIPLGV 120
  121 ISGRWNDTWA DRLITLYNFL GFGTPLFIFG LVMLFLFGFL YPIFPTSGSV DPQVAAGSFD 180
  181 YYLSKLNHMI LPALSGALIG TVGTVQYLRS EIIDTKHKDF VRTVKAKGVP ESKVYSRHIL 240
  241 RNSFLPIAAF LGYEITGLVG GSIILENIFG YPGIGQLFFQ SITQRDFSVV TALVLFTGFA 300
  301 TLLGTLLSDI ILSIVDPRIR ID

Type	Start	End	Confidence
Cytoplasmic	1	8	0.76
Transmembrane Helix	9	30	0.73
Non-Cytoplasmic	31	100	0.98
Transmembrane Helix	101	121	0.94
Cytoplasmic	122	135	0.82
Transmembrane Helix	136	160	0.88
Non-Cytoplasmic	161	187	0.92
Transmembrane Helix	188	208	0.94
Cytoplasmic	209	243	0.97
Transmembrane Helix	244	265	0.89
Non-Cytoplasmic	266	288	0.83
Transmembrane Helix	289	312	0.88
Cytoplasmic	313	322	0.90