YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260810, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLANPEKQTE VIHYEKIPSG FSIMWREFRK DKLAMFSLFF LALILIAVYT TSFIMKQEDI  60
   61 VRVDLFAIYD PPSAEHWLGT DYGGRDIFGQ LIIGTRNSFT VGLAITLLST LIGLTMGLIA 120
  121 GYFGGVVDNI IMRFIDFMMI LPFLMIVIVF ISLVPTFNIT TFILIMTAFL WVGKARLIRS 180
  181 KVLTEKELDY VSASKTLGTP NWKIIFQQIL PNLSSIIIVN ITLNLAGNIG IESSLTYLGF 240
  241 GLPESTPSLG TLVSYATNPD VLQEKWWIWL PASIMILVLM LCINFIGQAL KRAADARQRK 300
  301 G

Type	Start	End	Confidence
Cytoplasmic	1	32	0.94
Transmembrane Helix	33	53	0.94
Non-Cytoplasmic	54	100	0.88
Transmembrane Helix	101	123	0.91
Cytoplasmic	124	133	0.65
Transmembrane Helix	134	153	0.88
Non-Cytoplasmic	154	158	0.59
Transmembrane Helix	159	178	0.82
Cytoplasmic	179	208	0.89
Transmembrane Helix	209	231	0.77
Non-Cytoplasmic	232	266	0.84
Transmembrane Helix	267	287	0.95
Cytoplasmic	288	301	0.88