YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260806, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.66
Transmembrane Helix	17	38	0.89
Non-Cytoplasmic	39	44	0.54
Transmembrane Helix	45	66	0.84
Cytoplasmic	67	85	0.47
Transmembrane Helix	86	106	0.93
Non-Cytoplasmic	107	113	0.51
Transmembrane Helix	114	136	0.83
Cytoplasmic	137	142	0.53
Transmembrane Helix	143	163	0.87
Non-Cytoplasmic	164	168	0.45
Transmembrane Helix	169	191	0.86
Cytoplasmic	192	210	0.56
Transmembrane Helix	211	236	0.77
Non-Cytoplasmic	237	258	0.57
Transmembrane Helix	259	282	0.86
Cytoplasmic	283	289	0.54
Transmembrane Helix	290	309	0.88
Non-Cytoplasmic	310	314	0.43
Transmembrane Helix	315	337	0.82
Cytoplasmic	338	345	0.50
Transmembrane Helix	346	364	0.74
Non-Cytoplasmic	365	365	0.36
Transmembrane Helix	366	386	0.77
Cytoplasmic	387	483	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQTIKNDWF SNVKGDVLSG IVVALALIPE AIAFSVIAGV DPTVGLYAAF CIAVTISFVG  60
   61 GRTGMISAAT GAMALLMVTL VKDHGLQYLF ATTILTGIVQ IIFGVFKLSS FMKFVPKSVM 120
  121 SGFLNALGIL VFTAQLPQLK NATWQMYALV ALGLAIIYVF PRITTAVPST LIAIIIVTSI 180
  181 ALMSGLQLKT VGDMGSLPKE LPFFSIPDVP FTLETLGIIL PYAVMLAIIG LLESLLTASV 240
  241 LDDMTHTESN KHKEARGQGI ANIVAGFFGG MAGCAMIGQS VINIKSGGRG RLSTFVAGGF 300
  301 LIVLLFVLGD YVVHIPMAAL VAVMIMVSIG TFDWNSVATI HKVPKGNAFV MIVTVVVVLI 360
  361 THNLGLGVVI GTVISAVLFA FNMAKIHVKH LYIENKKIYE IHGQLFFAST ADFINNFSFN 420
  421 EDVKEIEMNF THAHVWDDSA VASIDKVIMK YEQSGVKVSI TGLNERSAKL VTNLATYNKR 480
  481 IAS