YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260765, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.77
Transmembrane Helix	13	34	0.94
Non-Cytoplasmic	35	40	0.65
Transmembrane Helix	41	60	0.92
Cytoplasmic	61	68	0.67
Transmembrane Helix	69	91	0.90
Non-Cytoplasmic	92	126	0.79
Transmembrane Helix	127	149	0.85
Cytoplasmic	150	157	0.68
Transmembrane Helix	158	179	0.88
Non-Cytoplasmic	180	194	0.80
Transmembrane Helix	195	214	0.93
Cytoplasmic	215	223	0.77
Transmembrane Helix	224	245	0.88
Non-Cytoplasmic	246	251	0.71
Transmembrane Helix	252	270	0.96
Cytoplasmic	271	290	0.93
Transmembrane Helix	291	310	0.94
Non-Cytoplasmic	311	359	0.95
Transmembrane Helix	360	381	0.91
Cytoplasmic	382	398	0.91
Transmembrane Helix	399	418	0.69
Non-Cytoplasmic	419	435	0.58
Transmembrane Helix	436	460	0.79
Cytoplasmic	461	515	0.52
Transmembrane Helix	516	536	0.87
Non-Cytoplasmic	537	539	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTWTQIYDP LNNIWLSALI AALPIFCFII CLVGFKMKGY MAGLYSVIVA IILAIFVYKM  60
   61 PTTAAVASAG FGVLSGFYPI CTIVIAAIFL YKLTVKTEQF NVIRDSISSI TNDQRLQVLL 120
  121 IAYSFGAFLE GAAGFGVPVA ITAALLVGMG FNPLKAAGIC LVANIAGGAM GAMGIPVTVP 180
  181 AQLTGIDALT VGRQAVYILP FISIVLPFLL VSMVDGFKGI KETWQGILVS GVSFAITQFV 240
  241 VTYFLGAELT NIFAAVVSMV ALALFLRVWQ PKSSAKEEKQ EEKESHTFNQ ILYAWSPFVF 300
  301 LTAFVTIFNL KPIKALFAPD GPLANLVFNI QFPGLHNQVI KTAPITKADT PFAAIFKLDV 360
  361 FSSTTTAIVL AIIVSLIVYR VNGKMIKELM IETIKELKVP VYTICSVIAL AYVENYSGMS 420
  421 STLGLAFSST GNAFPILSPI LGWIGVFITG SVVSSGSLFA PLQAVTADQL NIVPSTLVSL 480
  481 NVVGGTIAKM VSPQSVAVAC AAVGLVGKES ALFKTVMKYS LIFLAIISLL QLNAVFNIF