YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254093, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVKQWKQNF LLYMLLIISA VMVFFPVLYA FLISFMTPDD IQMRRIFPTQ FTFDNFINIF  60
   61 QKVPLFAYLY NSLVVSTVVM IGQLIVSSLA AYAFVFLQFK GRNLIFFLFI STMLIPWEAT 120
  121 MVPNFLTIQN FGWINSFAGM TVPFFATAFG IFLLRQHFMT LPNELKEAAF IEGIGNVRFL 180
  181 FSVVIPYCKT SFITLGVYSF LTTWNMYLWP LLVTTDETVR TVQIGVKQLQ SQEVATDWGS 240
  241 VMAGVTVIVI PTLILLFLGQ KQLQQGLTKG AIK

Type	Start	End	Confidence
Cytoplasmic	1	9	0.97
Transmembrane Helix	10	33	0.93
Non-Cytoplasmic	34	72	0.93
Transmembrane Helix	73	96	0.88
Cytoplasmic	97	103	0.83
Transmembrane Helix	104	122	0.93
Non-Cytoplasmic	123	133	0.74
Transmembrane Helix	134	154	0.90
Cytoplasmic	155	178	0.84
Transmembrane Helix	179	201	0.88
Non-Cytoplasmic	202	237	0.93
Transmembrane Helix	238	259	0.92
Cytoplasmic	260	273	0.94