YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260724, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEVSKLPVQ TKVSKKKNLW GRTKDLRIGL LFLAPSILLF SIFLFYPLFR TIYYSFYLTD  60
   61 IHGEANLFVG LENYQYLFSN PAFYKSIKST LLFVLYTVPT SIIFALFLAL IANGKVRGIG 120
  121 LFRVLFSSTM GISVAASAVI WLFLFHPSVG LFNNILASMN LPAIAWLTSP DWALFSVSVT 180
  181 TVWVNTGFAF LVILGGLQNI DTSLYESASI DGASYLYKLR RVTLPMLSPT LFFIVTVTLI 240
  241 SAFQSFGQID ILTHGGPNDA TNLIVYSIYK EAFVNHQFGT ASAQAMVLFV FIFIATLLQF 300
  301 KFAERKVHYK

Type	Start	End	Confidence
Cytoplasmic	1	27	0.95
Transmembrane Helix	28	49	0.93
Non-Cytoplasmic	50	90	0.94
Transmembrane Helix	91	112	0.93
Cytoplasmic	113	121	0.82
Transmembrane Helix	122	145	0.90
Non-Cytoplasmic	146	171	0.90
Transmembrane Helix	172	195	0.84
Cytoplasmic	196	223	0.89
Transmembrane Helix	224	246	0.87
Non-Cytoplasmic	247	280	0.93
Transmembrane Helix	281	300	0.93
Cytoplasmic	301	310	0.86