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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49183546, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVAATLSLP FAVYATPILA ATAATENMAV QSPKKHVFDA VIKAYKDNSD EESYATVYIK  60
   61 DPKLTIENGK RIITATLKDS DFFDYLKVED SKEPGVFHDV KVLSEDKRKH GTKVIQFEVG 120
  121 ELGKRYNMQM HILIPTLGYD KEFKIQFEVN MRTFVESDIE EDEEEQIEDT QNIIRDKRLQ 180
  181 QAINKNVLNR KDVNEPIFEE DLKEIKELNI YAGQGIESLK GLEYMENLER ITIQGSDVRN 240
  241 IAPISQLKRL KVVDLSFNKI ENVEPLVNLE KLDILELQNN RIADVTPLSQ LKKVRTINLS 300
  301 GNKISDIKPL YNVSSLRKLY VSNNKITDFT GIEQLNKLGT LGVGSNGLVN IEPISQMSGI 360
  361 VELNLEKNDI KDITSLSKLT GLQSLNLEEN YVSDVSSLSN LINLYELKLA TNEIRDIRPI 420
  421 QELGKRIKID AQRQKVFLDE AYMNEEVKIP VYDVNGTALQ NIEWKSEGGS ITNGVIKWNS 480
  481 LGEKMYEFKM DAGESKIRFQ GRVIQNIVEK REESSNVIQD MKLRQYMNKH NFERKNVNTP 540
  541 ITKEDLLTVK ALKITDGKKE GITDFSGLEF MTNVEELTLQ NVNMKNAEFI SSLRNLKSVD 600
  601 LSYNQIEDIK PLHSLEDLEK LNVSDNGIKN VPELFKMQKL KTLDLSNNKL DNAALDGIHQ 660
  661 LENLDALLVN NNEINNLDEI SKVSKLNKLE MMSNKVRDIS PLASLKNLQW LNLSDNKIQD 720
  721 ISTLSSMLDL LSLKLAGNEI RDVRPVIQLA QWITVDIKNQ KIVLEDGQMN QEIQIPIYDL 780
  781 EGEIFEDIEL KSTDGIVTDR GTVVWKTPGA KIYSFSLNGN YHGLSLLFSG TVTQNIVAKE 840
  841 EPKEPVEEVE GSKEEPIKEA EGSKEEPKEP AKEVEGSKEE PKEPAKEVEG SKEEVKEPAK 900
  901 EVEGPKEEVK EPTKEVEGPK EEVKEPTKEV EGPKEEVKEP MKEVEGSKEE VKGPTKEAEG 960
  961 SKEEVKEPTT EVEGSKEVKE PGKEVEGSKD AINQSAVAQE TNVNNQVGKE KVVENQNMKE1020
 1021 NKPAVTKQEE SKKSLGATGG QENTSTLLSG LALVLSALSM FVFRKRLFKK 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle