YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30253953, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.86
Transmembrane Helix	8	26	0.93
Non-Cytoplasmic	27	32	0.70
Transmembrane Helix	33	52	0.93
Cytoplasmic	53	63	0.88
Transmembrane Helix	64	86	0.88
Non-Cytoplasmic	87	92	0.73
Transmembrane Helix	93	117	0.86
Cytoplasmic	118	131	0.88
Transmembrane Helix	132	151	0.92
Non-Cytoplasmic	152	161	0.78
Transmembrane Helix	162	183	0.92
Cytoplasmic	184	208	0.91
Transmembrane Helix	209	229	0.85
Non-Cytoplasmic	230	242	0.69
Transmembrane Helix	243	263	0.84
Cytoplasmic	264	276	0.72
Transmembrane Helix	277	299	0.87
Non-Cytoplasmic	300	305	0.69
Transmembrane Helix	306	326	0.88
Cytoplasmic	327	333	0.71
Transmembrane Helix	334	353	0.92
Non-Cytoplasmic	354	354	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESMFNKIFL IVALIGVPLS VLGKTLHWPQ TIMFAVYCIT IIALAGFMGR ATESLAIVSG  60
   61 PRIGGLLNAT FGNAVELIIS IFALQAGLIE VVLASLTGSV LGNLLLVGGL SFFIGGLKYK 120
  121 RQSFNVYDAR HNSALLIFAV VVAFVIPEIF SMKMDAGKTY QLSIGVSIIM IIMYLAALLF 180
  181 KLVTHRGVYQ HKSDEVAHEE EPEWSKGKAL LILAIATIAV AYVSEALVHT FETVAKSFGW 240
  241 SELFIGVIIV AIVGNAAEHA SAIIMAYKNK VNIAVEIAVG STLQIAMFVA PVLVLLSMFF 300
  301 AQRMPLVFTI PELVSMITAV FLTIAISNDG DTNWFEGGTL LAAYVIMGIG FYLL