YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260545, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.67
Transmembrane Helix	14	39	0.86
Non-Cytoplasmic	40	49	0.66
Transmembrane Helix	50	74	0.84
Cytoplasmic	75	87	0.78
Transmembrane Helix	88	110	0.84
Non-Cytoplasmic	111	140	0.71
Transmembrane Helix	141	159	0.72
Cytoplasmic	160	225	0.72
Transmembrane Helix	226	247	0.87
Non-Cytoplasmic	248	261	0.82
Transmembrane Helix	262	281	0.90
Cytoplasmic	282	290	0.78
Transmembrane Helix	291	311	0.91
Non-Cytoplasmic	312	328	0.84
Transmembrane Helix	329	349	0.90
Cytoplasmic	350	360	0.66
Transmembrane Helix	361	379	0.90
Non-Cytoplasmic	380	413	0.80
Transmembrane Helix	414	435	0.93
Cytoplasmic	436	437	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFWLQFLTLL LCIFIGARLG GVGLGVMGGV GMAILVFVFH LQPTAPPIDV MLMILAVITA  60
   61 AGALQAAGGM DYLVHLAEKA LRKNPKRITF FAPIVTYLFT LCAGTGHVAY SVLPVIAEVS 120
  121 RESGIRPERP MSIAVIASQQ AITASPISAA TVALLAMLAD YKITLLDILK VSIPSTFIAC 180
  181 MIAAFVASKM GKELNEDPEY LKRLKEGMIP KIEEKKEFVG VKGAKLSVIL FLVGTFLVVL 240
  241 LGSFEALRPG WIVDGKLARL SMPNTIEMVM LTIAALIIIF CKPNVESIVS GNVFKAGATA 300
  301 VVAIFGIAWM GDTFFNGNLN MIQGSIQHLV TSAPWLFAIA LFILSILLYS QAATVRALMP 360
  361 LGLSLGIPPA LLIAMFPAVN GYFFIPNYGT IVAAINFDRT GTTGIGKYVL NHSFMIPGLI 420
  421 ATFTSIGIGM LLISIMF