YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30253907, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.85
Transmembrane Helix	15	36	0.93
Non-Cytoplasmic	37	55	0.85
Transmembrane Helix	56	76	0.92
Cytoplasmic	77	82	0.77
Transmembrane Helix	83	104	0.86
Non-Cytoplasmic	105	137	0.85
Transmembrane Helix	138	157	0.94
Cytoplasmic	158	177	0.84
Transmembrane Helix	178	201	0.92
Non-Cytoplasmic	202	307	0.78
Transmembrane Helix	308	326	0.92
Cytoplasmic	327	339	0.76
Transmembrane Helix	340	359	0.86
Non-Cytoplasmic	360	367	0.54
Transmembrane Helix	368	393	0.77
Cytoplasmic	394	413	0.74
Transmembrane Helix	414	436	0.87
Non-Cytoplasmic	437	545	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITSFDFWQ KFGKALLVVV AVMPAVGLMI SIGKLIGMSA GDINAVHTIA RVMEDIGWAI  60
   61 ITNLHILFAV AIGGSWAKDR AGGAFAALLA FVLTNRITGA IFGVNAEMLA DSKAKVSSVL 120
  121 AGDLIVKDYF TSVLGAPALN MGVFVGIITG FLGATLYNKY YNYNKLPQAL AFFNGKRFVP 180
  181 FVVIVWSTVT AIVLSLLWPF IQSGLNEFGR WIAASKDSAP VVAPFVYGTL ERLLLPFGLH 240
  241 HMLTIPMNYT ELGGTYTMLT GSKIGQVVAG QDPLWLAWIT DLNNLLANGD TKAYNDLLNN 300
  301 VVPARFKAGQ VIGSTAALMG IAFAMFRNVD KEKRAKYKPM FLSAALAVFL TGVTEPIEFM 360
  361 FMFIAPVLYV VYAITTGLAF ALADLINLRV HAFGFIELIT RTPMMVNAGL TRDLINFVIV 420
  421 SLVFFGLNFT LFNFLIKKFN LPTPGRAGNY IDNEDEASEG TGNVQEGSLA TKVIDLLGGK 480
  481 ENIADVDACM TRLRVTVKDL DVVAPEAQWK QNGALGLIVK DKGVQAVYGP KADVLKSDIQ 540
  541 DMLGA