YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30253888, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.93
Transmembrane Helix	13	37	0.86
Non-Cytoplasmic	38	68	0.90
Transmembrane Helix	69	89	0.92
Cytoplasmic	90	96	0.81
Transmembrane Helix	97	115	0.92
Non-Cytoplasmic	116	121	0.78
Transmembrane Helix	122	144	0.93
Cytoplasmic	145	154	0.80
Transmembrane Helix	155	177	0.90
Non-Cytoplasmic	178	195	0.90
Transmembrane Helix	196	217	0.88
Cytoplasmic	218	237	0.84
Transmembrane Helix	238	265	0.83
Non-Cytoplasmic	266	282	0.78
Transmembrane Helix	283	302	0.84
Cytoplasmic	303	311	0.62
Transmembrane Helix	312	330	0.94
Non-Cytoplasmic	331	338	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKEHDNTRS IAFTYKLILS IIAFFLIFMV AMVLGAADTS IKDVWLALTS SAKGDKISII  60
   61 REIRLPREVA AIFVGAGLAV SGAIMQGLTR NPLAEPGLLG LSGGANAALA LTLAFNPSIS 120
  121 YLYLTLACFI GAAVGAIMVF GIGMVKKGGL SPLRIVLAGA AVSAFLLAIS EGVGIYFKIS 180
  181 QDVSLWTAGG VIGTTWSQLK VIIPVISISI FIAILLAKKL TVLSFSEEVA IGLGQKIIVI 240
  241 KTILFIIIIL LAGASVALVG NMAFIGLMVP HMVRPIVGPD YRFVIPMSAI AGASFMLLAD 300
  301 TIGRTINAPY ETPVAAIVAI VGLPFFLFIV RKGGKTFS