YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260519, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.98
Transmembrane Helix	11	35	0.89
Non-Cytoplasmic	36	63	0.93
Transmembrane Helix	64	84	0.94
Cytoplasmic	85	93	0.84
Transmembrane Helix	94	114	0.93
Non-Cytoplasmic	115	119	0.88
Transmembrane Helix	120	143	0.92
Cytoplasmic	144	153	0.88
Transmembrane Helix	154	176	0.91
Non-Cytoplasmic	177	196	0.95
Transmembrane Helix	197	216	0.97
Cytoplasmic	217	244	0.90
Transmembrane Helix	245	268	0.91
Non-Cytoplasmic	269	282	0.73
Transmembrane Helix	283	303	0.88
Cytoplasmic	304	310	0.76
Transmembrane Helix	311	332	0.88
Non-Cytoplasmic	333	335	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPSILRKQR LIILALLILT ITTIVIGMGL GSASLSYDRL LPILMGQGTF KEEFVLYSLR  60
   61 LPRIIITLLA GMALALSGAI LQGITRNDLA EPGILGINSG AGVAVAIFFL YFPIDVGSFL 120
  121 YLLPVVGFIG AFLTAVLIYV FSYSKSSGLQ PVRLTLTGIG FAFALSGMMI VLISSADRMK 180
  181 VDFISKWIAG NIWGDDWIFI FAMLPWLIVL IPFVFYKANR LNILALNEPV AIGVGIEIEK 240
  241 ERRYLLVAAV ALAAAAVSVT GGISFIGLMA PHIAKSLVGP RHQIFMPIAL LIGGWLLLLA 300
  301 DTIGRNIVEP NGIPAGIVVA LIGAPYFMYL LLKKA