YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260511, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.89
Transmembrane Helix	7	28	0.93
Non-Cytoplasmic	29	32	0.84
Transmembrane Helix	33	52	0.87
Cytoplasmic	53	64	0.81
Transmembrane Helix	65	88	0.86
Non-Cytoplasmic	89	100	0.59
Transmembrane Helix	101	123	0.86
Cytoplasmic	124	131	0.60
Transmembrane Helix	132	155	0.85
Non-Cytoplasmic	156	187	0.66
Transmembrane Helix	188	208	0.90
Cytoplasmic	209	227	0.60
Transmembrane Helix	228	250	0.76
Non-Cytoplasmic	251	254	0.43
Transmembrane Helix	255	269	0.80
Cytoplasmic	270	270	0.02
Transmembrane Helix	271	285	0.52
Non-Cytoplasmic	286	312	0.49
Transmembrane Helix	313	333	0.62
Cytoplasmic	334	402	0.80
Transmembrane Helix	403	425	0.83
Non-Cytoplasmic	426	431	0.69
Transmembrane Helix	432	453	0.89
Cytoplasmic	454	473	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKEIPFGVA MIPIIITVAV MMVTIVVLKQ SPHVPLIIGT TVASIVAWRY GYKWNDIEEA  60
   61 MYKGIHLALP AIVIIILVGL TIGAWIGGGI VATMIYYGLN LLTPSLFLVS ITIICSIVAL 120
  121 AIGSSWSTMG TIGVAGMGIG LSMGIPAPMV AGAIISGSYF GDKMSPLSDT TNLAAGLTNT 180
  181 DLFTHIRHML FTTIPGLIIT LIVYAFLGRS FGANNIDAKS IEQTLQVLQQ NFVISPFLLI 240
  241 IPVVVMVLVA KKVPAIPAIL VGIILGFLSQ VFIQGGSVSA SVGALQAGFV IDTGNKLVDE 300
  301 LFNRGGLDSM MNTVSMTIVA MTFGGVLEHT GILRSIVNQI LKLAKSAKGL IASTIASCFA 360
  361 TNLTCSEQYI SIVVPSRMYA NAYTEKGLHS KNLSRALEDG GTLTSVFVPW NTCGVFILAT 420
  421 LGVGAFEYAP YAILNFIVPI ISIIYGITGL TITKLSDIEK AELLKKQNAQ LEA