YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30253706, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRSPLFLLI TSIICVLVGL YIQSSYIEIF ASVMGIINVW LLAREKVSNF LFGMITVAVF  60
   61 LYIFITQGLY AMAVLAAFQF IFNVYGWYHW IARSGEEEVK ATVRLDLKGW IFYIIFILVA 120
  121 WIGWGYYQVH YLESTSPYLD ALNAVLGLVA QFMLSRKILE NWHLWILYNV VSISIYISTG 180
  181 LYVMLILAVI NLFICVAGLL EWKNNYKGQK HTNNYI

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.63
Transmembrane Helix	7	27	0.88
Cytoplasmic	28	46	0.57
Transmembrane Helix	47	65	0.85
Non-Cytoplasmic	66	70	0.63
Transmembrane Helix	71	91	0.88
Cytoplasmic	92	108	0.91
Transmembrane Helix	109	128	0.93
Non-Cytoplasmic	129	136	0.80
Transmembrane Helix	137	155	0.70
Cytoplasmic	156	165	0.56
Transmembrane Helix	166	200	0.73
Non-Cytoplasmic	201	216	0.56