YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30253693, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAYEINNQL LTNEEKKELT INKDQQKISR KKEVFRKFVS NPIAVLGSVT LLLIIVFSLI  60
   61 GESLTPFTAS EQVKKATNLP PSSEHWFGTD DLGRDIWART WAGGKISLTV GLVAAALDIG 120
  121 LGVLIGGFSG YVRGRNCLGT LIDEWIIRGI EVLYGIPYLL IVILLLIVMK PGLFTIIIAL 180
  181 ALTGWIGMAR LIRAQVLSLK QREFVIAAER LGTSHMKIIY GHLIPNLTGI IIVNLSFTIP 240
  241 AAIFSESFLS FIGLGVQSPA ASWGTMTNDA LGTLLSGEWW QLFFPAIMIA LIMFAFNAIG 300
  301 DGLQDAIDPK IIKRNRKEKK HGASLIFRKR NISR

Type	Start	End	Confidence
Cytoplasmic	1	37	0.99
Transmembrane Helix	38	60	0.93
Non-Cytoplasmic	61	106	0.97
Transmembrane Helix	107	132	0.86
Cytoplasmic	133	144	0.96
Transmembrane Helix	145	168	0.86
Non-Cytoplasmic	169	172	0.83
Transmembrane Helix	173	192	0.93
Cytoplasmic	193	219	0.90
Transmembrane Helix	220	244	0.81
Non-Cytoplasmic	245	281	0.75
Transmembrane Helix	282	303	0.87
Cytoplasmic	304	334	0.82