YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30253692, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVYVIKKLS VMVFTLWVIT TVTFLIMHII PGDPFSSDAK IFPEEVIQNM RAKYHLDEPL  60
   61 WNQYVAYLDG VVHFDFGESV QSTGQGVSEI ITTGFGPSAI IGLQALIISL LVGIAAGTFA 120
  121 ALYHGKVIDY SVSLLAILGI SIPSFILAPL FIQVFAIQFE LLPVASWGTF EHTVLPSFAL 180
  181 ALGPIAVITR FVRSNMIEVL QSDYIKLARA KGIPIKKIII RHALRNAIVP VLTFVGPLMA 240
  241 GLLTGTFVIE KIFSIPGLGK YFVDSIFNRD YPVIMGTTIF YSALLILCIF ITDIIHRIVD 300
  301 PRIRSIT

Type	Start	End	Confidence
Cytoplasmic	1	8	0.98
Transmembrane Helix	9	30	0.91
Non-Cytoplasmic	31	99	0.97
Transmembrane Helix	100	123	0.91
Cytoplasmic	124	131	0.85
Transmembrane Helix	132	155	0.89
Non-Cytoplasmic	156	171	0.85
Transmembrane Helix	172	192	0.91
Cytoplasmic	193	226	0.95
Transmembrane Helix	227	249	0.91
Non-Cytoplasmic	250	272	0.94
Transmembrane Helix	273	295	0.89
Cytoplasmic	296	307	0.90