YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30253567, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.98
Transmembrane Helix	8	30	0.89
Non-Cytoplasmic	31	48	0.92
Transmembrane Helix	49	69	0.94
Cytoplasmic	70	88	0.89
Transmembrane Helix	89	110	0.93
Non-Cytoplasmic	111	124	0.86
Transmembrane Helix	125	146	0.91
Cytoplasmic	147	163	0.86
Transmembrane Helix	164	182	0.91
Non-Cytoplasmic	183	188	0.77
Transmembrane Helix	189	210	0.94
Cytoplasmic	211	233	0.89
Transmembrane Helix	234	255	0.93
Non-Cytoplasmic	256	286	0.97
Transmembrane Helix	287	308	0.92
Cytoplasmic	309	327	0.88
Transmembrane Helix	328	347	0.94
Non-Cytoplasmic	348	359	0.83
Transmembrane Helix	360	381	0.92
Cytoplasmic	382	390	0.75
Transmembrane Helix	391	409	0.95
Non-Cytoplasmic	410	416	0.76
Transmembrane Helix	417	437	0.94
Cytoplasmic	438	449	0.85
Transmembrane Helix	450	471	0.92
Non-Cytoplasmic	472	484	0.91
Transmembrane Helix	485	506	0.89
Cytoplasmic	507	533	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESKKYQAFW RGAIILTIAS FVTKVLSAFY RIPYQNIAGD IGFYIYQQIY PFYGFCLILA  60
   61 TYGFPIIISK MVAERLERGK KQEAEEIICV SFWFLLGIGF IGFFTLFFGA EVIATAMGDI 120
  121 HLDKLLRVIS FSFILMPFLS VARGYFQGFN NMVPTAVSQV IEQTIRVSII VFLSLFLIAH 180
  181 EFDLYTVGAG AMLGSIAGGL IGIIVLILYM RHDFRSIFFK SVKRIKGKKK IIKILFWQGL 240
  241 AICVSNLVLI FIQMADSVSF YSLLIGAGEP AESAKVLKGV YDRSIPLMQL GTVVTTSFSL 300
  301 SLIPIITAAK ERGDLTFIRE KVRLAMKITF VIGFAAAIGL TCIIQPTNIM LFENSDGSDV 360
  361 LSILSLSILF SSLSITTASI LQGLGQTLKP AIFVVFGGCL KLVLNYILMP YFGAKGAAIA 420
  421 TLVALIVISV LNSMLLMRAV SESLIDKRNM LGIVISGFSM GFVLIMFMRV LQMSGLVMDT 480
  481 SHRGVATFEA LLGVAIGGLA YMFLILKLRV FTKAEIGTVM KKEKKEGSLK KSG