YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32414595, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVGRVVCVA LPFLLTVASL VALLVGGLAG VADKSMYMFD VNLSNFSISL ADAGELLNLN  60
   61 ESSILKAGAQ QIFGRDVEAT TIDDLTKRDD SNGGLTNLTA SLLGFYDIYD ISLWGYCTTA 120
  121 HNGTRECTKA KFNWAEDALN GTQHDINSLL TLTGQNVTLP KEVTDAFKTY VTASKWAQIV 180
  181 FIIALVALVV EIVFGIFANC SRVLSCLTWL VAGIAAVAVC GFAALATGIS VIVVGAVETV 240
  241 AGKYNAEGEF NKRFMVAIWV AAAFALASAF FWMFTICCCA PSSHGGHHSS RSSRRSVGME 300
  301 NEKLIGSPYQ PVGGYHAHGA NGKPSQGFLG GGGGGYASQP QQQYAKRDMA YEPYSHQRI

Type	Start	End	Confidence
Signal Peptide	1	29	0.92
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	175	0.97
Transmembrane Helix	176	198	0.90
Cytoplasmic	199	206	0.79
Transmembrane Helix	207	232	0.87
Non-Cytoplasmic	233	256	0.86
Transmembrane Helix	257	281	0.85
Cytoplasmic	282	359	0.95