YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85114063
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	144	0.90
Transmembrane Helix	145	165	0.90
Non-Cytoplasmic	166	171	0.62
Transmembrane Helix	172	190	0.72
Cytoplasmic	191	508	0.88
Transmembrane Helix	509	532	0.90
Non-Cytoplasmic	533	546	0.78
Transmembrane Helix	547	570	0.79
Cytoplasmic	571	1138	0.86
Transmembrane Helix	1139	1156	0.82
Non-Cytoplasmic	1157	1166	0.55
Transmembrane Helix	1167	1188	0.82
Cytoplasmic	1189	1224	0.71
Transmembrane Helix	1225	1247	0.85
Non-Cytoplasmic	1248	1258	0.62
Transmembrane Helix	1259	1276	0.75
Cytoplasmic	1277	1283	0.72
Transmembrane Helix	1284	1304	0.93
Non-Cytoplasmic	1305	1323	0.76
Transmembrane Helix	1324	1343	0.92
Cytoplasmic	1344	1562	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPRPADEDE GGAEPTPITA TQRSRWATRK LTVKSSGLKR LSLKNRNNHG NAVGIEKKRA  60
   61 SGHSGKSDST AGQSDTPPPT AGGHAGKDDA DEQHSEPRTI FCGLPLADEF KDDEGHPTQQ 120
  121 YPRNKIRTAK YTPLSFVPKN LWFQFHNIAN IFFLFVVILV IFPIFGGVNP GLNAVPLIVI 180
  181 ICVTAIKDAV EDYRRTVLDN VLNNAPVHKL HGIPNVNVEA DNVSLWRRFK KANSRFFGAL 240
  241 WHKTEGLWKK EDDNPILKNH TASHDEPDPR MSMESRTSRA RRSLNVVRDE VEMTPVPSPL 300
  301 PHQPNEMDFP GEGSSRQVDN KYALQDIKGD LVNRNLPISG KARFAKDAWK GLVVGDFVRI 360
  361 YNDDEIPADI IILATSDPDG ACYVETKNLD GETNLKVRSA LRCGRGMKHA RDCERAQFII 420
  421 ESEPPQPNLY KYNGAVRWLQ ELPNDEDGDP IPMSEPISID NMLLRGCNLR NTEWALGVVV 480
  481 FTGHDTKIMM NAGVTPSKRA RIARELNINV VYNFTILLIM CLIAAIANGV AWAKTDASSY 540
  541 WFEWGSIGGT SGLTGFITFW AAVIVFQNLV PISLYISLEI VRTLQAYFIY SDINMYYEPI 600
  601 DAPCIPKSWN ISDDVGQIEY IFSDKTGTLT QNVMEFKKAT INGQPYGEAF TEAQIGMSKR 660
  661 SGGGDIESEI ARIKDEIEQA KARTLHGLRE IHNNPYLHDE DLTFVAPDFV EDLAGKNGPE 720
  721 QQKANEHFML ALALCHTVVA EKQPGDSPKM IFKAQSPDEA ALVATARDMG FTVLGMSDGG 780
  781 VNVNVMGKDM HYPVLNIIEF NSSRKRMSAI VRMPDGKIKL FCKGADSIIY ARLKRGEQKE 840
  841 LRRETAEHLE MFAVEGLRTL CIAEKELTEQ EYYEWKKEHD VAATALENRE EKLEEVADKI 900
  901 EQDLTLLGGT AIEDRLQDGV PDAIELLGNA GIKLWVLTGD KVETAINIGF SCNLLNNDMD 960
  961 LVRLQVSEDE AGVQQEAEYL RLAEEELDRG LAKFGMTGSD EELRQAKKDH EPPAPTHGLV1020
 1021 VDGFTLRWVL SDTLKQKFLL LCKQCKSVLC CRVSPAQKAA VVSMVKNGLD VMTLSIGDGA1080
 1081 NDVAMIQEAD VGVGIAGEEG RQAVMSSDYA IGQFRFLTRL VLVHGRWSYR RLAETISNFF1140
 1141 YKNMVWTWAI FWFQIFCDFD ISYIFDYTYI LMFNLFFTSI PVILMGVLDQ DVSDTVSLAV1200
 1201 PQLYRRGIER LEWTQTKFWA YMADGIYQSV MSFFIPFIFC ILTPAASGNG LDVQERTRLG1260
 1261 CYIAHPAVLT INMYILMNTY RWDWVMLLVV FLSDIFIFFW TGIYTATSYS GQFYQAAPQV1320
 1321 YAEFTFWMAF IITPTICLLP RLVTKCIQKQ MFPYDVDIIR ERISTGEYKA IEVPVVAPVE1380
 1381 DEALKGTSSG SSESSSSRAK SKSSKHSKHT HYASVDEDRR PIYPPSVNTH HTRAQNGSDG1440
 1441 TNYTRHSLDT NQIEDEPPMG GGRPSIDRAR PSYDRLRRSM DRERIRQSLE QSNDFTSAAR1500
 1501 LSRIESTHSA QNLPTPGAQR RFNLTTVRKR GLSVFSKQSE DEVPHPGVED EDKRDERRDS1560
 1561 QQ