YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28919853, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESHWVDWN KNTQSKDYRG SGSFSTFIII GPVCFFLGIL FAQFPYDFPL LWTSEPVQAT  60
   61 YYDFLETHVK FLHASPLIIS RILNIVIFVG LLGFFMKLFR PAESNVLFDG ASLILYVIGV 120
  121 GVYTSNIVKG MRTITAGIWD MEDFAGIKHD GPVSGEVILG REDTMKVLSA SNTILAMVLV 180
  181 GVLVLQAGQW YAESKEKDDY AKGDKKEKKN DGQQQQQQQQ QPQPVEEKKS Q

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	42	0.94
Non-Cytoplasmic	43	76	0.89
Transmembrane Helix	77	96	0.94
Cytoplasmic	97	105	0.81
Transmembrane Helix	106	127	0.83
Non-Cytoplasmic	128	167	0.88
Transmembrane Helix	168	188	0.80
Cytoplasmic	189	231	0.85