YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259805, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISRVENISQ PQFYNHNKIW TKPFIIAIIV VIILGIISLF TGVYDIRGQE DGMEMFFITR  60
   61 VPRTVALMLT GAAMAMAGLV MQLITQNRFV EPTTTGTIEW SSLGLLFVYL LFPAPTLVQR 120
  121 MTGAIIFSFI GTMIFFLFLR RVKLRSSLIV PIIGLMLGAV ISAVSTFLGL LFQMTQSIET 180
  181 WFVGSFANIQ VGRYEYLWLI VIVTLLIFMY ANRLTLAGLG EDVATSLGVN YNRIVLFGTA 240
  241 LISVAVGIVA AVIGNLPFLG LIVPNIVSMF RGDDLRSNLP WVCVIGMGTI TACDIISRTI 300
  301 IKPFELPVSL ILASVGAVVF ITILLRKRKP RRLR

Type	Start	End	Confidence
Cytoplasmic	1	19	0.81
Transmembrane Helix	20	43	0.90
Non-Cytoplasmic	44	63	0.74
Transmembrane Helix	64	85	0.92
Cytoplasmic	86	94	0.69
Transmembrane Helix	95	113	0.85
Non-Cytoplasmic	114	120	0.62
Transmembrane Helix	121	139	0.95
Cytoplasmic	140	147	0.78
Transmembrane Helix	148	172	0.89
Non-Cytoplasmic	173	193	0.78
Transmembrane Helix	194	216	0.83
Cytoplasmic	217	233	0.67
Transmembrane Helix	234	259	0.84
Non-Cytoplasmic	260	305	0.57
Transmembrane Helix	306	325	0.95
Cytoplasmic	326	334	0.87