YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259267, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.61
Transmembrane Helix	5	24	0.66
Cytoplasmic	25	29	0.63
Transmembrane Helix	30	48	0.93
Non-Cytoplasmic	49	56	0.78
Transmembrane Helix	57	77	0.89
Cytoplasmic	78	88	0.89
Transmembrane Helix	89	110	0.93
Non-Cytoplasmic	111	116	0.77
Transmembrane Helix	117	138	0.93
Cytoplasmic	139	154	0.84
Transmembrane Helix	155	173	0.93
Non-Cytoplasmic	174	185	0.80
Transmembrane Helix	186	209	0.88
Cytoplasmic	210	218	0.84
Transmembrane Helix	219	236	0.93
Non-Cytoplasmic	237	242	0.70
Transmembrane Helix	243	261	0.81
Cytoplasmic	262	273	0.77
Transmembrane Helix	274	292	0.90
Non-Cytoplasmic	293	298	0.71
Transmembrane Helix	299	320	0.87
Cytoplasmic	321	334	0.80
Transmembrane Helix	335	356	0.88
Non-Cytoplasmic	357	367	0.78
Transmembrane Helix	368	390	0.90
Cytoplasmic	391	596	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVESLLLSIV IIITLGIASQ WTAWRFQLPA IVVMAVAGLL IGPVFGIINP KEVLGDVFSP  60
   61 LVSLSVAIIL FEGSLSLDIR ELRGLSKPVF RIVTFGAFIA WIAGSLAAHY VAGLDWAVAF 120
  121 IIGGLFIVTG PTVIIPLLRQ ARLKPRTAAI LKWEGIIVDP FGALLAVFAF QIVNFLTKEN 180
  181 VQLHTLLYFF AGSLFAMVLG YIFSIFMSYM ILKGKVPEYL KAPILLVTVL LCFGIADEVM 240
  241 HETGMLAVTV MGITLARMKK YISSIGDIRH FNENISVLLT STVFIILTAS LPRTTIMEIF 300
  301 SWPIISFVLM MLFVVRPLSI WISTIGTELT KAERALVGWI APRGIVALTV SSYFATELLQ 360
  361 EGYKDASILT ALTFALVITT VCAHGFSIGF LAKRLGLANT EPPGILISGA STFSSAFALH 420
  421 CKEMGVPSLI VDVSEEHLQC AKVKGLNTYN GQVLSEQLQF EVDMNQYEYL IAVTDTDSYN 480
  481 VLVANTYVPQ FGHHNTFLLP IHDVEKIEQE RISLSKKAHL LFGQNEIYEE LNRKIEDGYT 540
  541 FKTIQVAEEQ KINKEEINSE DLILFIRHRD GSLTFSTLYK YIAVMPGDEL VVLAKQ