YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30263771, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLSRVLRA DFIKMKHTIF FWIHVAMPII GIALFLSYYS FSKLDSINKV LGYIQVLSIS  60
   61 FPLLISIVCS SVVEQEALAG NFKELLSTEY GRRKALISKV CLLLICGFCS TMLAVVGFAT 120
  121 GFHFLLGQNE IPFALYVEIS FILFSCQIFM YIWHLFLNFR FSKGASIGIG IIESLLAALM 180
  181 LTGMGDVIWK YTPCAWSMRL CNYFLEYKLS PSSIRALPVE AATGAVICVC FTIIAFVISL 240
  241 MWFSFYEGRK EM

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	41	0.93
Non-Cytoplasmic	42	50	0.92
Transmembrane Helix	51	73	0.88
Cytoplasmic	74	99	0.90
Transmembrane Helix	100	122	0.92
Non-Cytoplasmic	123	133	0.78
Transmembrane Helix	134	155	0.93
Cytoplasmic	156	164	0.81
Transmembrane Helix	165	188	0.86
Non-Cytoplasmic	189	220	0.96
Transmembrane Helix	221	245	0.92
Cytoplasmic	246	252	0.94