YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30263591, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.66
Transmembrane Helix	5	24	0.85
Cytoplasmic	25	33	0.67
Transmembrane Helix	34	52	0.63
Non-Cytoplasmic	53	65	0.68
Transmembrane Helix	66	89	0.87
Cytoplasmic	90	121	0.97
Transmembrane Helix	122	144	0.88
Non-Cytoplasmic	145	159	0.87
Transmembrane Helix	160	181	0.92
Cytoplasmic	182	188	0.71
Transmembrane Helix	189	210	0.86
Non-Cytoplasmic	211	230	0.93
Transmembrane Helix	231	253	0.88
Cytoplasmic	254	270	0.94
Transmembrane Helix	271	294	0.92
Non-Cytoplasmic	295	314	0.93
Transmembrane Helix	315	336	0.85
Cytoplasmic	337	365	0.85
Transmembrane Helix	366	386	0.96
Non-Cytoplasmic	387	394	0.78
Transmembrane Helix	395	415	0.94
Cytoplasmic	416	421	0.88
Transmembrane Helix	422	441	0.95
Non-Cytoplasmic	442	450	0.72
Transmembrane Helix	451	469	0.96
Cytoplasmic	470	492	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIEIMVSLA IYMAGMLYIG YWSYKKTSDL SDYMLGGRGL GPAVTALSAG ASDMSGWMLM  60
   61 GLPGAMYATG LSSVWIAIGL LIGAYANYLI LAPRLRTYTE VANDSITIPD FLENRFKDRT 120
  121 KILRFVSAIV ILVFFTFYAS AGLVSGGRLF ENSFNLDYKI GLFVTVGVVV AYTLFGGFLA 180
  181 VSWTDFVQGC IMFIALVLVP IVAFTDVGGV TETFNTIKQV DASHLDMFKG TTILGIISFL 240
  241 AWGLGYFGQP HIIVRFMAIT SIKDLKTSRR IGIGWMTISI IGAMLTGLVG IAYYAKNNAT 300
  301 LQDPEMVFVT FSNILFHPYI TGFLLSAILA SIMSSISSQL LVISSAVTED FYKTFFRRKA 360
  361 SDKELVFIGR LSVLVVAMIA VVLAYHPSDT ILTLVGYAWA GFGSAFGPAI LLSLYWKRTN 420
  421 KWGVLAGMIV GALVVITWVQ IPSLKASMYE MVPGFFCSLL AVIIVSLVTK EPVKAIHREF 480
  481 NEMEAVLEEE TK