YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30262933, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.44
Transmembrane Helix	7	30	0.82
Cytoplasmic	31	41	0.38
Transmembrane Helix	42	76	0.75
Non-Cytoplasmic	77	85	0.48
Transmembrane Helix	86	108	0.90
Cytoplasmic	109	115	0.90
Transmembrane Helix	116	139	0.89
Non-Cytoplasmic	140	159	0.85
Transmembrane Helix	160	182	0.88
Cytoplasmic	183	210	0.88
Transmembrane Helix	211	233	0.92
Non-Cytoplasmic	234	239	0.81
Transmembrane Helix	240	260	0.85
Cytoplasmic	261	265	0.71
Transmembrane Helix	266	284	0.90
Non-Cytoplasmic	285	292	0.72
Transmembrane Helix	293	312	0.91
Cytoplasmic	313	329	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYVYRWEGV LIVLLLIEFI LFSLINSDFL NISNLLFSTN DFLFIAIAAI PMTFVIVTGG  60
   61 IDVSVGSIMG LTSILIGVLW MNGISILFAV IISLIISCLA GALNGFIIKM TDVEPLVVTL 120
  121 GTMFLYGGIA LVISGGAGAS GYEGISGLPD AFVQLASGSF IGIPNLLWLL IVLTVLCAVL 180
  181 FHRTIYGRHV KLTGANENAA KYTGIMTKKV VIIAYMLSGL GGGLGGTFLT AYFGSARADM 240
  241 GSETILPIIT AVVLGGTLIT GGKGSIIGTV LASIFIGLMQ YGLQMTGLTN EQSNVVIGII 300
  301 LILSVIMRHF KLHQFTLGKR KNLHKGEMS