YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30262912, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIKKESLEM RQMRKKVVLI GTGLIGGSLA LAIKKDHDVT ITGYDIFQEQ VERAKELHVV  60
   61 DEIAVDLQHA CEEAHLIVFA SPVEETKKLL HKLASFHLRE DVIVTDVGST KGSIMNEAEA 120
  121 LFSKEISFIG GHPMAGSHKT GVESAKAHLF ENAFYILTPM HHVPNEHVEE LKDWLKGTGS 180
  181 HFLVLNTEEH DYVTGIVSHF PHLIAAGLVK QVEKHAGDNP LIHQLAAGGF KDITRIASSS 240
  241 PKMWSDIVKQ NREHLMVLLK EWISEMEDLY DTVSSGDAGE IQNYFADAKE YRDSLPVRKR 300
  301 GAIPAYHDLY VDVLDKVGAL AHVTSILARE EISITNLQIL EAREGLLGVL RISFQREEDR 360
  361 MKAKLALGEE KYQTYETI

Type	Start	End	Confidence
Signal Peptide	1	32	0.93
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	378	0.99