YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30262889, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.57
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDIVASTQL PNTIKTITND LRKLGLKKGM TVIVHSSLSS IGWISGGAVA VVEALMEVIT  60
   61 EEGTIIMPTQ SSDLSDPKHW SRPPVPEEWW QIIRDNVPAF EPHITPTRAM GKVVECFRTY 120
  121 PNVVRSNHPL GSFAAWGRHA EEITVNQSLS MSLGEESPLR KIYDLDGYIL LIGVGYDSNT 180
  181 SVHLSEVRSG ACELIKVGAP IIENGERVWK EFVDMDYDSD KFVEIGVEFE QKGTVTMGKI 240
  241 GNAKCRLMKQ RDIVDFGTEW FRKKN

Type	Start	End	Confidence
Cytoplasmic	1	31	0.54
Transmembrane Helix	32	52	0.53
Non-Cytoplasmic	53	265	0.98