YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30262627, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILGGRKVYN TYFHRMDGAV ELLLFIFCMT LTFLFFDFRV LLFLFFIGCI GLVVAKIPFR  60
   61 KIFIVFSVIF TFSLLNSVMI LFITPSHGSE LTGSYTSFMY IVYATITYET LFYTATLSLK 120
  121 YFTLLPFTLI LIYTTNPSEF VSSLSKFRVH YKIIYAINIA LRYIPDIQSE YKVIKHAQEA 180
  181 RGVAFEKGEA SLWIRMKNRI LIFWPLIIHS LERIDTVSNA MDLRGFGKKN TRTWFYTNKA 240
  241 NSGDFIALFI GVFILITAVY LKLHVFQNFW YPF

Type	Start	End	Confidence
Cytoplasmic	1	12	0.82
Transmembrane Helix	13	35	0.81
Non-Cytoplasmic	36	39	0.64
Transmembrane Helix	40	57	0.89
Cytoplasmic	58	62	0.73
Transmembrane Helix	63	84	0.91
Non-Cytoplasmic	85	99	0.73
Transmembrane Helix	100	124	0.61
Cytoplasmic	125	241	0.85
Transmembrane Helix	242	264	0.88
Non-Cytoplasmic	265	273	0.78