YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30257182, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFLKKITIL LLSFVITALI VLYFYLYVNG PIIQAKSAIL IDANSGEVVY KKNEENSIQS  60
   61 ATLSKLMTEY IVLEQLDKGN IQLDEVVKIS NEVFRAETSP IQVTSKDKTT VRDLLHALLL 120
  121 TGNNRSTLAL AEHIAGNEDN FTQLMNEKAK QLKLSQPSPF LNATGMNNGT NKLSTTTAIE 180
  181 VGKLATRLVT DFPDVLNVTK LTSYQFTFKD TKVFNTNKMI YSLNKNIKLQ GVDGLQTSFS 240
  241 TNSNYSFVST AKRGDTRLIS VILDADNENS TFIETKKLLQ YGFDPSSYSA LQAFKDAVTS 300
  301 WAVLLQFKNL IIQTLLIFFI ITILMLLHIR QKKSEDFN

Type	Start	End	Confidence
Cytoplasmic	1	6	0.87
Transmembrane Helix	7	27	0.87
Non-Cytoplasmic	28	309	0.95
Transmembrane Helix	310	329	0.94
Cytoplasmic	330	338	0.90