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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|30256982, gi|...
Protein type: Transmembrane
Type Confidence: 0.77
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENYRSREE RRQVKKKKQP ASKTQKPKGK TSFFRKFLIT CLLLGIVGLV GGVATFFVMI  60
   61 KDAPKLEKAK LVNPLSSKIY DKNGDLVYEY GKEKRTNVTY DQIPKLVENA FLATEDARFY 120
  121 EHSGVDFKGT ARAVLVSLKG DYGSQGGSTI TQQVIKNYFL SMEKTSKRKI QEIYLAYKLE 180
  181 QQYSKHEILE MYLNKINLGN RSYGIATAAQ NYYGKELKEL TLPEVAMLAG LPKAPNNYDP 240
  241 TKTENVQRAT ERRNVVLKLM NRHGYITKAE MEEASKVEVT DGLKTATVQA MPYPAFMDAV 300
  301 VKEVEKELPD ANIGSDGLEI YTTLDIDAQK AADRILDANI INYPNDKFQS AFTFMDTKTG 360
  361 EVRAIGSGRG ENKAVFKGHN MAIELDRAAG STMKPIFDYG PAIEYLKWAT YHQIDDSPFK 420
  421 YSTGQEVRNA DRSHLGSITM REALKMSRNV PAVKAAKEVG LNKAKEFSEK LGITLKSAPE 480
  481 STAIGTNEVS PTEIAGAYAT FGNGGKYAKP HFVKKVVYPD GKSQSFGQKP KQVIADSTAY 540
  541 MITDMLRSVV TSGTGTAANI SSLDVAGKTG TTNYDSKQLA KFNIPESATR DSWFAGYTPQ 600
  601 YTMAVWTGYM KDGKDEYISS KNTKIAQLIF KEMMSEMATD KSRFKMPSSV IQEGSELRIK 660
  661 GEKRDSSPNT SVPDTTEKPK QDQQQKTEEE KKQEELKKQE ELKKQEEEKK QEELKKQEEQ 720
  721 KKLEEQKKQE EEKKQNEQNN GNGQGTTPPA NNGGGQGTTP PANNGGGQGN TTPPANNGGG 780
  781 QGNTTPPANN GGGQGNTTPP ATTQPETGGN AGEAPANNGQ 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle