YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30256057, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWIVRLQPV SLIIGSLFGF MLMKRKMKNE SVPYEKMMDA VTNAFLIIVF VWKFAPAILN  60
   61 PVWAIRSPLQ ALLAIGSTKH IVVGCIIASV YIVWKSKKGQ FSLRTLLDAL PIALCMSIIF 120
  121 YFLFHQKVGV QTTLPWGVKV YESNFLYHPI FAYEIILALC IVGLLWMKNE RLGNGKNISV 180
  181 FLIIEGFAHI IISLVSEQNS VLFGLSMQQI LSFCIMSLGI LFVPKR

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.91
Transmembrane Helix	5	23	0.90
Cytoplasmic	24	39	0.89
Transmembrane Helix	40	59	0.88
Non-Cytoplasmic	60	71	0.71
Transmembrane Helix	72	94	0.92
Cytoplasmic	95	104	0.87
Transmembrane Helix	105	125	0.94
Non-Cytoplasmic	126	144	0.97
Transmembrane Helix	145	167	0.92
Cytoplasmic	168	176	0.82
Transmembrane Helix	177	195	0.93
Non-Cytoplasmic	196	201	0.82
Transmembrane Helix	202	223	0.91
Cytoplasmic	224	226	0.84