YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261380, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNFKKISAF ITVIGLFFLT PMTLRAETNI GVNPEQVAPP PKEGPNVFSQ FATTIDAKTG  60
   61 DILYDKNAHH RAFPASMTKV LTAILLMEHT KPEDQFTFSQ LALDQEKSNY QIEFQPGETI 120
  121 NRNTALMILM VLSANDVSYA IAERIGGSVE NFANMMNERA KQLGATDSHF VTPNGLHDPN 180
  181 HYTTPYDMAM ITRGVQKYPE ILQAMNTKRT TVTTSRQTVS IFNKSTYFEN PFSIGGKTGF 240
  241 TNEARNTLVL LNEKDGNRII NVVMASQRPE IYEDLKQMAD YSFGQFVKQT VLDKHSWHQK 300
  301 TTYLNKDIDS ELEKSAELML KKDEVKNVKT TFRAASLDKD SLYHKGIHRG EVVGAVDITK 360
  361 NNQTIATVNV LSKEDVTFAM PKKDTIEPEV NESNVKIISI GIGAAILFGA ILFVVLRRNT 420
  421 KGMKSEEK

Type	Start	End	Confidence
Signal Peptide	1	26	0.98
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	396	0.99
Transmembrane Helix	397	416	0.96
Cytoplasmic	417	428	0.93