YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261149, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAFLGELIG TALLIVLGGG VCAGVSLKKS FAKDSGWIVI TMGWGLAVAV AAYVVGSISG  60
   61 AHLNPALTIG LAFKGAFPWG DVPGYIAAQM IGAIIGAVIV YLHYLPHWKE TEDPGTKLGV 120
  121 FATGPAIPNT FANLLSEMIG TFVLVFGILA IGANKFADGL NPFIVGFLIV SIGLSLGGTT 180
  181 GYAINPARDL GPRIAHFFLP IAGKGGSNWK YAWIPVVGPI LGGSLAGLFH QVVFEGKQNA 240
  241 ALIYVIIATV IVLAISYMTS KKSGSNTNSR KVA

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.87
Transmembrane Helix	8	27	0.96
Cytoplasmic	28	36	0.84
Transmembrane Helix	37	61	0.85
Non-Cytoplasmic	62	84	0.89
Transmembrane Helix	85	105	0.95
Cytoplasmic	106	130	0.85
Transmembrane Helix	131	153	0.85
Non-Cytoplasmic	154	162	0.80
Transmembrane Helix	163	184	0.94
Cytoplasmic	185	210	0.89
Transmembrane Helix	211	233	0.90
Non-Cytoplasmic	234	239	0.89
Transmembrane Helix	240	260	0.94
Cytoplasmic	261	273	0.95