YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260864, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGKKQINYV KSEYIGRSLV TFCGIFIVLV TLAIIAFICG KGIQSFTQSG ISFTEMLTST  60
   61 KWSPNADEGT FGAVIFIVGS TVVSLGAVII SAPIAIALAI FMNLISPKFG NKVLKPVLEL 120
  121 LVGIPSVVYG LLGVTILVPL LRDSFGGVGF SLIAGIVVLS IMILPTIASI ASDAIRSVPF 180
  181 DYLEASYGLG STKWQAISRV IVPAAKKGIL TGVVLGLARA FGEALAVQMV IGNTIKLPEG 240
  241 IYSPTATLTG ILTMDMTNTL NGTAWNNALW TLAMILLVIS FLFILVIRAI GQRGER

Type	Start	End	Confidence
Cytoplasmic	1	18	0.92
Transmembrane Helix	19	40	0.93
Non-Cytoplasmic	41	71	0.95
Transmembrane Helix	72	105	0.81
Cytoplasmic	106	116	0.93
Transmembrane Helix	117	140	0.89
Non-Cytoplasmic	141	147	0.78
Transmembrane Helix	148	168	0.94
Cytoplasmic	169	207	0.92
Transmembrane Helix	208	227	0.78
Non-Cytoplasmic	228	267	0.83
Transmembrane Helix	268	290	0.91
Cytoplasmic	291	296	0.90