YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260852, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.97
Transmembrane Helix	13	33	0.95
Cytoplasmic	34	53	0.93
Transmembrane Helix	54	76	0.88
Non-Cytoplasmic	77	96	0.95
Transmembrane Helix	97	121	0.85
Cytoplasmic	122	136	0.80
Transmembrane Helix	137	158	0.91
Non-Cytoplasmic	159	184	0.91
Transmembrane Helix	185	207	0.92
Cytoplasmic	208	223	0.90
Transmembrane Helix	224	247	0.91
Non-Cytoplasmic	248	273	0.83
Transmembrane Helix	274	293	0.83
Cytoplasmic	294	304	0.77
Transmembrane Helix	305	329	0.86
Non-Cytoplasmic	330	340	0.77
Transmembrane Helix	341	360	0.92
Cytoplasmic	361	375	0.80
Transmembrane Helix	376	399	0.88
Non-Cytoplasmic	400	411	0.88
Transmembrane Helix	412	434	0.93
Cytoplasmic	435	448	0.92
Transmembrane Helix	449	470	0.92
Non-Cytoplasmic	471	490	0.91
Transmembrane Helix	491	513	0.90
Cytoplasmic	514	583	0.97
Transmembrane Helix	584	617	0.76
Non-Cytoplasmic	618	644	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLDEFFVTG DPIIYGADAS IVLVTLAIIF VLTKYKKWKW LWDEWLTTVD HKKIGAMYII  60
   61 SAVIMLFRGG MDGLMIRAQL TFPETTYLNA EHYNGIFTTH GTVMILFMAM PFVMGLMNLV 120
  121 VPLQIGARDV AYPFLNALSF WLFFVGAMLF NIAFVIGGSP DAGWTSYFPM AGTEFTSGVG 180
  181 NNYYAIALQI SGLGTLMTGI NFLVTILKMR TPGMTLMRMP MFTWSILITT IIIIFAFPVL 240
  241 TVALALMTFD RLFDAHFFTM ASGGMPMLWA NLFWVWGHPE VYIVILPAFG IFSEIISTFS 300
  301 RKRLFGYSAM VYSMVAISLL SFVVWLHHFF TMGAGPAVNS FFSISTMAIS IPTGVKIFNW 360
  361 LFTLYKGRIR FTVPMLWSLA FIPNFVVGGV TGVMLGMAAA DYQYHNSYFL IAHFHYVLIA 420
  421 GTVFAMLAGF TFWYPKMTGH MLNERLGKWT FWIFMSGFNI CFFPMYFLGL DGMTRRMYTY 480
  481 SESLGWGWLN QIASVGAVMM GIGFLLLCYN VIWSARHGER DTTGDPWDGR TLEWATQSPV 540
  541 QHYNFAKLPE IKEADAFWYM KKRGETVTPA AEDIKPIHMP SNSGVPIIAS GFFGLAGFAL 600
  601 VFSWFWLAAI GGIGILACLI YRSFDYDEGY YISVDEIKKS EHVA