YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254209, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKDTRAKKG RSKKKRLLWF LLIPLLIIAL GAGGYSFHIY SKAKSILSNA YSELGRGDKS  60
   61 SKREKAVKPM TDNISILIMG VDESDIRDKN YGKATRTDAL LLATINKNDK SVKLVSIPRD 120
  121 SRVYIKSREK YDKITHAHVF GGVDSTIDTV ENFLDVPVDY YVKFNFKSFI KIVDSLGGIT 180
  181 VDVPVEFTEQ NSKDEADAIH LKKGRQHLNG EEALALARTR HIDSDYMRGQ RQQLVLEAIA 240
  241 EKALSLNSIN KIGGLLDAVD KDLKTNLTFD DMMTIAKNSM GSNLKMDKLQ VEGTDKYIGG 300
  301 IYYYVPNEKS VNNISTTLQE HLGVTNKNEH KKL

Type	Start	End	Confidence
Signal Peptide	1	31	0.62
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	333	0.99