YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254030, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQEKNNANG KSRRPIVYIK RTIILVLLFS LVYFMYTKIV THNKKEEILK AAEMKKQEEL  60
   61 KKKEEKKKQE AQKQKEQEEQ VKQAQAAEQP AEGPPQEINE NAQLDQYLQN IGFSGTAVIV 120
  121 KNGKVLVNKG YGMANKEKQV PNNSETTFYI GSISKAFVAT AIMQLKDQHK LNVEDTIAKY 180
  181 IPDFPQGNSI QLKHLLTHTS GIPEYEQGAE DISHEELIKR IGKQKRIGSP GEKWKYSDSN 240
  241 YSILAYIAEK VSGQPLEEYI KQHIFAPAGM KHSGFGRELE QTRFPSTGYK IVNNNMTTPN 300
  301 IPSMSQLYGC GDIYTSAHDL YLFNEALFSG KLISKESYDQ MFTGGKKDYG FGWYVDPGSY 360
  361 SNHGVMPGWN CLNGFSKNGS VYVVLLSNIQ NNIKSFGKVN NDIYTMLRNI EV

Type	Start	End	Confidence
Cytoplasmic	1	16	0.93
Transmembrane Helix	17	37	0.87
Non-Cytoplasmic	38	412	0.99