YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85110219
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	147	0.99
Transmembrane Helix	148	171	0.85
Non-Cytoplasmic	172	183	0.75
Transmembrane Helix	184	205	0.91
Cytoplasmic	206	214	0.85
Transmembrane Helix	215	234	0.95
Non-Cytoplasmic	235	240	0.86
Transmembrane Helix	241	263	0.91
Cytoplasmic	264	272	0.86
Transmembrane Helix	273	296	0.89
Non-Cytoplasmic	297	304	0.82
Transmembrane Helix	305	325	0.88
Cytoplasmic	326	380	0.92
Transmembrane Helix	381	400	0.92
Non-Cytoplasmic	401	416	0.82
Transmembrane Helix	417	438	0.92
Cytoplasmic	439	457	0.91
Transmembrane Helix	458	479	0.93
Non-Cytoplasmic	480	486	0.85
Transmembrane Helix	487	507	0.92
Cytoplasmic	508	516	0.69
Transmembrane Helix	517	539	0.81
Non-Cytoplasmic	540	553	0.76
Transmembrane Helix	554	576	0.94
Cytoplasmic	577	633	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLTEADREI AAAEIDASPM EFAGQESLAR RSDEVERVMS TSSVSTSSSE ERQRRARRMS  60
   61 GVSTQHDLER HPTELSRIQT QRSQHSGTVG RSGTRNTRTS RRSEKPLPPF GAGKPYPPQL 120
  121 PDPDEYVVEF DGPDDPLHAM NWPFKKKFWS AAMLGYTSLV AAFGSSIFSS ATSSIARIYH 180
  181 VNQTVGILGV SFYVLGFAFG PTLWAPLSEL KGRKLPIVIG MFGMAIFSIA TATAKDLQTI 240
  241 LITRFFGGFF GACPLAVVAA VFSDMFDNRT RGIAITLFSM TVFTGPMMAP FIGGFISTSY 300
  301 LGWRWTEYIV SFMAFLAFGL DLLFMHETYP PQILVKKASE LRRRTLNWGI HAKQEEIEID 360
  361 FKELVSKNFS RPLRLLFGEP IVALLSIYMA FIYGILYLFL TAYPIVFQGV YHMTPGVSGL 420
  421 TFFGMITGQI LAGVTILLQQ PWYMRKLNAN NGVPIPEWRL PSVIAGGVAF SAGLFWFGWS 480
  481 GYSGKVHWIV PTLSGILSGF GLASIFLQAL NYLVDSYLMF AASAIAGNTF LRSLAGAGFP 540
  541 LFSTYMFKGM GIQWASTLLG CVAAALVPIP IIFLYYGHRI RAKSAYAPTF APRAPAAEDE 600
  601 SGDETNSEHA VGEKDHQPSS VPRKDGDAAT NSV