YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28925366, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.48
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPRINLPPV TRISLLALGL QSVLSAAIRY RQWTAHSEIV IPYLNLIPQL SLVYPWTFVT  60
   61 TTLVESNIFT FSIAALTLYH GGRYLERAWS SRELAKFLLV TSLIPNALCF ATLIFFFTFT 120
  121 RNERWTLMTI AGTISLQISF LVAFSQLVPA HTVTLFRGIL SLRVPRFPLL YIGVVTALCL 180
  181 TPMLTSVSFL LAVYGFITSW TYLRFYKAVF PDLDQSQTSS LRGDASETFA FAEFFPGPVR 240
  241 PVVAGISENV FNMLVAMRVC TPFTQDHISA ARGDNAFSHH SHQRGVPGSA RAEAERRRAL 300
  301 ALKALDQRLH AATAGAAARA SSNPAPPAVQ PPAPSATGPT VQTQPQANTQ KTMTAQTGEA 360
  361 GASSDNDGSR SSA

Type	Start	End	Confidence
Signal Peptide	1	25	0.48
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	55	0.82
Transmembrane Helix	56	79	0.83
Cytoplasmic	80	96	0.84
Transmembrane Helix	97	119	0.93
Non-Cytoplasmic	120	126	0.86
Transmembrane Helix	127	150	0.81
Cytoplasmic	151	168	0.76
Transmembrane Helix	169	195	0.89
Non-Cytoplasmic	196	373	0.76