YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28925217, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFAYPPRKS SNPPPFRPRT SALPTIRGKR LKTIVLIGLA FLTLLWLFQR GGRSRHAPPA  60
   61 YHKPSGNPPV VIVTVFNEGK YGKGYLDMVK ENRLKYAEKH AYLPSSPPDP GYGTFFVKSS 120
  121 DYDLRGAPVS WATLPAVRHA MTEFPDASYI WYLDQNAFIM NPQLKIEEHV MKPSRLEELM 180
  181 IKDHPVVPPD SIIKTFSHLK GHDVDFVLTQ DKDGLSSSSF VVKNGEWAKF FLETWFDPIY 240
  241 RTYNFQKAEQ HALEHIVQWH PTILAKLALV PQRILNSYSK EKGGQEYKEG DLAVRLYACG 300
  301 EAGEDTCETE SQRFAQWKAA YQDS

Type	Start	End	Confidence
Signal Peptide	1	54	0.73
N-region	1	45
H-region	46	51
C-region	52	54
Cleavage Site	54	55
Non-Cytoplasmic	55	324	0.99